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Adjoint method for a tumor invasion PDE-constrained optimization problem in 2D using Adaptive Finite Element Method

机译:肿瘤侵袭的伴随方法pDE约束优化问题   在2D中使用自适应有限元法

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摘要

In this paper we present a method for estimating unknown parameter thatappear in a two dimensional nonlinear reaction-diffusion model of cancerinvasion. This model considers that tumor-induced alteration ofmicroenvironmental pH provides a mechanism for cancer invasion. A coupledsystem reaction-diffusion describing this model is given by three partialdifferential equations for the 2D non-dimensional spatial distribution andtemporal evolution of the density of normal tissue, the neoplastic tissuegrowth and the excess concentration of H+ ions. Each of the model parametershas a corresponding biological interpretation, for instance, the growth rate ofneoplastic tissue, the diffusion coefficient, the re-absorption rate and thedestructive influence of H+ ions in the healthy tissue. After solving thedirect problem, we propose a model for the estimation of parameters by fittingthe numerical solution with real data, obtained via in vitro experiments andfluorescence ratio imaging microscopy. We define an appropriate functional tocompare both the real data and the numerical solution using the adjoint methodfor the minimization of this functional. We apply a splitting strategy jointwith Adaptive Finite Element Method (AFEM) to solve the direct problem and theadjoint problem. The minimization problem (the inverse problem) is solved byusing a trust-region-reflective method including the computation of thederivative of the functional.
机译:在本文中,我们提出了一种估计未知参数的方法,该参数出现在二维二维非线性反应扩散模型中。该模型认为肿瘤引起的微环境pH值改变提供了癌症侵袭的机制。描述该模型的耦合系统反应扩散由三个偏微分方程给出,它们分别是正常组织密度,肿瘤组织生长和过量H +离子的二维无量纲空间分布和时间演化。每个模型参数都有相应的生物学解释,例如,肿瘤组织的生长速度,健康组织中H +离子的扩散系数,重吸收率和破坏性影响。解决了直接问题之后,我们提出了一个通过数值解与实际数据拟合来估计参数的模型,该模型是通过体外实验和荧光比成像显微镜获得的。我们定义了一个适当的函数,使用伴随方法来比较实际数据和数值解,以最小化该函数。我们将分裂策略与自适应有限元方法(AFEM)结合使用,以解决直接问题和伴随问题。最小化问题(反问题)通过使用包含函数泛函的计算的信任区域反射方法来解决。

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